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Here is a compilation of various resources. We give a selection of web sites, data sources and software related to our research interests. NOTICE: materials on this page are freely accessible. However, they remain property of their author and might be copyrighted. |
Organizations
- AAAS-American Association for the Advancement of Science
- APS - American Physical Society
- AIP - American Institute of Physics
- OSA - Optical Society of American
- IOP - Institute of Physics
- Optics Organization
- ACS - American Chemical Society
- Biophysical Society
- Nano Hub
- American Nano Society
- Electronic Structure Orgnization
- arXiv.org
- Association for Biology Laboratory Education
- Addgene
Companies
- Sigma-Aldrich
- SABiosciences - A Qiagene Company
- LifeTein - Custom Peptide/Antibody Synthesis Services
- Hot Biology Wetsites
- New England BioLabs
- Invitrogen
- Advanced Cell Diagnostics - RNAscope
- Princeton Instruments
- Newport
- Thorlabs
- Hamamatsu
- Standford Research Systems
- Olympus Optical Microscope
- nPoint Piezo Scanners
- Piezosystem Jena
- Ekspla Laser
On-line Journals
- Genamics JournalSeek
- Science Magazine
- Nature Materials
- Nature Physcis
- Phys. Rev. Lett.
- Nature Photonics
- Nature Nanotechnology
- PNAS---Proceeding of National Acedemy of Science USA
- APS Journals---Online Journals of American Physical Society
- IOP Journals---Oneline Journals of Institute of Physics, UK
- OSA Journals---Online Journals of Optical Society of American
- AIP---Online Journals of American Institute of Physics
- ACS---Online Journals of American Chemical Society
- PLoS Computational Biology
- Analog Applications Journal of TI
On-line Journals
- Genamics JournalSeek
- Science Magazine
- Nature Materials
- Nature Physcis
- Phys. Rev. Lett.
- Nature Photonics
- Nature Nanotechnology
- PNAS---Proceeding of National Acedemy of Science USA
- APS Journals---Online Journals of American Physical Society
- IOP Journals---Oneline Journals of Institute of Physics, UK
- OSA Journals---Online Journals of Optical Society of American
- AIP---Online Journals of American Institute of Physics
- ACS---Online Journals of American Chemical Society
- PLoS Computational Biology
- Analog Applications Journal of TI
Blog and On-line Tutorials
Physics and Materials Science
- Research Highlight in APS Journals
- Scientist Solutions Forum
- BBC World Service 'Next Steps in Renewable Energy’ broadcast---RSC Advancing the Chemical Sciences
- A Focus on Solar Fuels and Artificial Photosynthesis---RSC Publishing Blogs Home
- A focus on solar photovoltaics---RSC Publishing Blogs Home
- Video Courses for Nanotechnology
- ElectronicStructure
- The Basic Deisgn Rules for Microfluidic Devices
- The Accelrys Webinar Series for Materials Design
Biophysics, Molecular Biology and Genomics
Databases
- Chemical Probes for Biological Targets
- NIH Medline
- NCBI PubMed
- Reactome
- Academy of Molecular Imaging
- Predict Protein Structure
- NCBI Molecular Structure Database
- Protein DataBase (PDB) Home
- UniPro---Free resource of protein sequence and functional information
- NCBI Protein Sequence Server
- NCBI Gene Search
- NCBI BLAST
- UCSC Genome BLATing
- GenePattern---a powerful genomic analysis platform
- NCBI Gene Expression Omnibus---a public functional genomics data repository
- ArrayExpress---functional genomics data
- Expression Atlas
- Bioconductor---Analysis Tool for Genomic Data
databases that contain protein-DNA interaction data
- ENCODE ChIP-Seq Significance Tool
- The Eukaryotic Promoter Database
- Search for Transcription Factor---PAZAR Mall
- CHIPBase - Decoding Transcriptional Binding Map
- hPDI: Human Protein-DNA Interactome
databases that contain PPI data
- IntAct: the molecular interaction database
- BioGrid: the Biological General Repository for Interaction Datasets
- PIR Protein Information Resource
- HPRD: Human Protein Reference Database---PPI
- MIPS: Mammalian Protein-Protein Interaction Database
- MINT; the Molecular INTeraction database
Pathways and Models
Integrated Databases
Softwares
- TI Webench Designer Center
- TIDesigns Library
- AI Softwares
- Python Extension Packages
- Scikit-Learn: Machine Learning in Python
- Python Scientific Lecture Notes
- Bayesian Probabilistic Programming with IPython
- Fortran Online Information
- Mathematical Subroutines
- FFTW: fast Fourier transform package
- AFLOWLib---distributed materials genome properties repository
- DFTB
- Quantum Espresso
- OpenMX
- VMD---Visual Molecular Dynamics
- Membrane Proteins of Known 3D Structures
- Atomistic Simulation of Inorganic Solids
- CAMP: Center for Atomic-Scale Materials Physics
- GAMGI: General Atomistic Modeling Graphic Interface
- GPAW: Grid-based PAW method
- ICoDE: Internet Computing on Demand
- ICSD Web
- BioImageXD
- Source Code Collection for Imaging